镜像站点 · 本页由第三方 GitHub 只读镜像提供，非 GitHub 官方站点，不接受任何登录或凭据输入。前往 github.com
Skip to content
@nf-core

nf-core

A community effort to collect a curated set of analysis pipelines built using Nextflow.
README.md

Pinned Loading

  1. tools tools Public

    Python package with helper tools for the nf-core community.

    Python 328 267

  2. modules modules Public

    Repository to host tool-specific module files for the Nextflow DSL2 community!

    Nextflow 434 1.1k

  3. rnaseq rnaseq Public

    RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

    Nextflow 1.4k 909

  4. sarek sarek Public

    Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

    Nextflow 614 565

  5. configs configs Public

    Config files used to define parameters specific to compute environments at different Institutions

    Nextflow 114 377

  6. proposals proposals Public

    Where new ideas for nf-core pipelines, special interest groups and more are proposed

    10 6

Repositories

Showing 10 of 203 repositories
  • website Public

    Code and files for the main nf-core website.

    nf-core/website's past year of commit activity
    MDX 100 MIT 301 124 32 Updated Oct 27, 2026
  • proteinfold Public

    Protein 3D structure prediction pipeline

    nf-core/proteinfold's past year of commit activity
    HTML 116 MIT 75 85 (4 issues need help) 12 Updated Oct 26, 2026
  • modules Public

    Repository to host tool-specific module files for the Nextflow DSL2 community!

    nf-core/modules's past year of commit activity
    Nextflow 434 MIT 1,130 283 (1 issue needs help) 191 Updated Oct 27, 2026
  • strict-syntax-health Public

    Track Nextflow strict syntax linting health across nf-core pipelines

    nf-core/strict-syntax-health's past year of commit activity
    Python 7 MIT 4 0 0 Updated Oct 26, 2026
  • stats Public

    nf-core in numbers

    nf-core/stats's past year of commit activity
    Python 2 4 45 15 Updated Oct 27, 2026
  • setup-nextflow Public

    A GitHub action to install Nextflow

    nf-core/setup-nextflow's past year of commit activity
    TypeScript 31 MIT 5 4 17 Updated Oct 26, 2026
  • genomicrelatedness Public

    Bioinformatics pipeline for estimating genetic relatedness from low-coverage whole-genome sequencing (sWGS) data

    nf-core/genomicrelatedness's past year of commit activity
    Nextflow 2 MIT 5 0 0 Updated Oct 26, 2026
  • tools Public

    Python package with helper tools for the nf-core community.

    nf-core/tools's past year of commit activity
    Python 328 MIT 267 369 97 Updated Oct 26, 2026
  • seqsubmit Public

    nf-core pipeline for data submission to ENA

    nf-core/seqsubmit's past year of commit activity
    Nextflow 22 MIT 11 21 7 Updated Oct 26, 2026
  • scdownstream Public

    A single cell transcriptomics pipeline for QC, integration and making the data presentable

    nf-core/scdownstream's past year of commit activity
    Nextflow 118 MIT 69 11 3 Updated Oct 26, 2026
View all repositories