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miRpipe

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miRDeep2 and mirAligner based pipeline for miRNA quantification from small RNA-Seq

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Name		Name	Last commit message	Last commit date
misc		misc
README.Rmd		README.Rmd
README.md		README.md
documentation		documentation
filter_reads.sh		filter_reads.sh
miRpipe.sh		miRpipe.sh
predict_reads.sh		predict_reads.sh
process_reads.sh		process_reads.sh
run_miraligner.sh		run_miraligner.sh
run_quantifier.sh		run_quantifier.sh
update_db.sh		update_db.sh

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miRpipe

Simonas Juzenas 2018-03-16

Simplified scheme of the pipeline:

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miRDeep2 and mirAligner based pipeline for miRNA quantification from small RNA-Seq

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