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@aidenlab

Aiden Lab

The Center for Genome Architecture

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  1. juicer juicer Public

    A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

    Shell 493 191

  2. Juicebox Juicebox Public

    Visualization and analysis software for Hi-C data -

    Java 306 61

  3. 3d-dna 3d-dna Public

    3D de novo assembly (3D DNA) pipeline

    Shell 232 59

  4. straw straw Public

    Extract data quickly from Juicebox via straw

    C++ 70 35

  5. BEAR BEAR Public

    BEAR: viral diagnostic analysis pipeline for SARS-CoV-2

    Shell 6 1

  6. EigenVector EigenVector Public

    Forked from moshe-olshansky/EigenVector

    R functions for very fast eigenvector calculation

    C 11 4

Repositories

Showing 10 of 47 repositories
  • plugins Public

    Claude plugin marketplace from the Aiden Lab: Juicebot (Juicebox Hi-C viewer control) and more

    aidenlab/plugins's past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 7, 2026
  • spacewalk-mcp Public

    A Connector for Claude and ChatGPT that lets the model open and drive a Spacewalk 3D chromatin viewer

    aidenlab/spacewalk-mcp's past year of commit activity
    TypeScript 0 MIT 0 1 0 Updated Nov 6, 2026
  • spacewalk Public
    aidenlab/spacewalk's past year of commit activity
    JavaScript 0 MIT 0 2 0 Updated Nov 6, 2026
  • juicebox-mcp Public

    Juicebot: AI control for the juicebox.js Hi-C contact map viewer — MCP server (Cloudflare Worker) and @aidenlab/juicebox-remote

    aidenlab/juicebox-mcp's past year of commit activity
    JavaScript 0 MIT 2 2 0 Updated Nov 5, 2026
  • igvjs-mcp Public
    aidenlab/igvjs-mcp's past year of commit activity
    TypeScript 0 MIT 0 4 0 Updated Nov 5, 2026
  • juicebox-view Public
    aidenlab/juicebox-view's past year of commit activity
    JavaScript 0 0 2 0 Updated Nov 5, 2026
  • geenee Public
    aidenlab/geenee's past year of commit activity
    TypeScript 0 0 5 0 Updated Nov 5, 2026
  • juicebox.js Public

    HiC contact matrix visualization

    aidenlab/juicebox.js's past year of commit activity
    JavaScript 24 MIT 16 23 0 Updated Nov 5, 2026
  • juicebox-web Public
    aidenlab/juicebox-web's past year of commit activity
    JavaScript 3 2 4 2 Updated Nov 4, 2026
  • hic-straw Public

    Command line and web utilities for reading .hic contact matrix files

    aidenlab/hic-straw's past year of commit activity
    JavaScript 10 MIT 6 2 3 Updated Oct 26, 2026
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